Determination of Gasdermin Pores

Methods Mol Biol. 2023:2696:149-167. doi: 10.1007/978-1-0716-3350-2_11.

Abstract

The gasdermin family represents a type of membrane pore-forming proteins. The gasdermin family is extensively characterized as the executioner of pyroptotic cell death in mammals; recent studies suggest that gasdermin-like pore-forming proteins are also present in bacteria and fungi. In humans, gasdermin D (GSDMD) is activated through inter-domain cleavage by caspase-1 in the canonical inflammasome pathway and cytosolic LPS-activated caspase-4 or caspase-5. The cleavage disrupts the autoinhibition of GSDMD and liberates the N-terminal gasdermin-N domain that binds to membrane lipids and forms pores of an inner diameter of ~18 nm on the membrane, responsible for cell pyroptosis. Here, we describe the methods of determining the phospholipid-binding and pore-forming activity of gasdermins in a robust in vitro system. We also introduce a method of specifically detecting the caspase-cleaved form of GSDMD in pyroptotic cells.

Keywords: Caspase; GSDMD; Gasdermin; Inflammasome; LPS; Liposome; Pore-forming protein; Pyroptosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Caspases / metabolism
  • Gasdermins*
  • Humans
  • Inflammasomes / metabolism
  • Intracellular Signaling Peptides and Proteins* / metabolism
  • Mammals / metabolism
  • Neoplasm Proteins / metabolism
  • Pyroptosis

Substances

  • Gasdermins
  • Intracellular Signaling Peptides and Proteins
  • Neoplasm Proteins
  • Caspases
  • Inflammasomes