Expanding the FurC (PerR) regulon in Anabaena (Nostoc) sp. PCC 7120: Genome-wide identification of novel direct targets uncovers FurC participation in central carbon metabolism regulation

PLoS One. 2023 Aug 7;18(8):e0289761. doi: 10.1371/journal.pone.0289761. eCollection 2023.

Abstract

FurC (PerR, Peroxide Response Regulator) from Anabaena sp. PCC 7120 (also known as Nostoc sp. PCC 7120) is a master regulator engaged in the modulation of relevant processes including the response to oxidative stress, photosynthesis and nitrogen fixation. Previous differential gene expression analysis of a furC-overexpressing strain (EB2770FurC) allowed the inference of a putative FurC DNA-binding consensus sequence. In the present work, more data concerning the regulon of the FurC protein were obtained through the searching of the putative FurC-box in the whole Anabaena sp. PCC 7120 genome. The total amount of novel FurC-DNA binding sites found in the promoter regions of genes with known function was validated by electrophoretic mobility shift assays (EMSA) identifying 22 new FurC targets. Some of these identified targets display relevant roles in nitrogen fixation (hetR and hgdC) and carbon assimilation processes (cmpR, glgP1 and opcA), suggesting that FurC could be an additional player for the harmonization of carbon and nitrogen metabolisms. Moreover, differential gene expression of a selection of newly identified FurC targets was measured by Real Time RT-PCR in the furC-overexpressing strain (EB2770FurC) comparing to Anabaena sp. PCC 7120 revealing that in most of these cases FurC could act as a transcriptional activator.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anabaena* / genetics
  • Anabaena* / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Gene Expression Regulation, Bacterial
  • Nostoc* / metabolism
  • Regulon / genetics
  • Transcription Factors / genetics

Substances

  • Bacterial Proteins
  • Transcription Factors

Grants and funding

This work was founded by Ministerio de Ciencia, Innovación y Universidadaes (grant 438PID2019-104889GB-I00) and from Gobierno de Aragón (grant E35_20R Biología Estructural) The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.