Antiviral Activity of an Indole-Type Compound Derived from Natural Products, Identified by Virtual Screening by Interaction on Dengue Virus NS5 Protein

Viruses. 2023 Jul 17;15(7):1563. doi: 10.3390/v15071563.

Abstract

Dengue is an acute febrile illness caused by the Dengue virus (DENV), with a high number of cases worldwide. There is no available treatment that directly affects the virus or the viral cycle. The objective of this study was to identify a compound derived from natural products that interacts with the NS5 protein of the dengue virus through virtual screening and evaluate its in vitro antiviral effect on DENV-2. Molecular docking was performed on NS5 using AutoDock Vina software, and compounds with physicochemical and pharmacological properties of interest were selected. The preliminary antiviral effect was evaluated by the expression of the NS1 protein. The effect on viral genome replication and/or translation was determined by NS5 production using DENV-2 Huh-7 replicon through ELISA and viral RNA quantification using RT-qPCR. The in silico strategy proved effective in finding a compound (M78) with an indole-like structure and with an effect on the replication cycle of DENV-2. Treatment at 50 µM reduced the expression of the NS5 protein by 70% and decreased viral RNA by 1.7 times. M78 is involved in the replication and/or translation of the viral genome.

Keywords: Dengue virus; NS5 protein; antiviral activity; natural compounds.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antiviral Agents / chemistry
  • Biological Products* / pharmacology
  • Dengue Virus* / genetics
  • Dengue* / metabolism
  • Humans
  • Molecular Docking Simulation
  • RNA, Viral / genetics
  • Viral Nonstructural Proteins / genetics
  • Virus Replication

Substances

  • Antiviral Agents
  • Biological Products
  • RNA, Viral
  • Viral Nonstructural Proteins

Grants and funding

This research was funded by Ministerio de Ciencia, Tecnología e Innovación -Minciencias, project number 111380863020, convocatory 808-2018 and the APC was funded by Minciencias and Universidad del Quindío.