Structure-Based Discovery of Receptor Activator of Nuclear Factor-κB Ligand (RANKL)-Induced Osteoclastogenesis Inhibitors

Int J Mol Sci. 2023 Jul 10;24(14):11290. doi: 10.3390/ijms241411290.

Abstract

Receptor activator of nuclear factor-κB ligand (RANKL) has been actively pursued as a therapeutic target for osteoporosis, given that RANKL is the master mediator of bone resorption as it promotes osteoclast differentiation, activity and survival. We employed a structure-based virtual screening approach comprising two stages of experimental evaluation and identified 11 commercially available compounds that displayed dose-dependent inhibition of osteoclastogenesis. Their inhibitory effects were quantified through TRAP activity at the low micromolar range (IC50 < 5 μΜ), but more importantly, 3 compounds displayed very low toxicity (LC50 > 100 μΜ). We also assessed the potential of an N-(1-aryl-1H-indol-5-yl)aryl-sulfonamide scaffold that was based on the structure of a hit compound, through synthesis of 30 derivatives. Their evaluation revealed 4 additional hits that inhibited osteoclastogenesis at low micromolar concentrations; however, cellular toxicity concerns preclude their further development. Taken together with the structure-activity relationships provided by the hit compounds, our study revealed potent inhibitors of RANKL-induced osteoclastogenesis of high therapeutic index, which bear diverse scaffolds that can be employed in hit-to-lead optimization for the development of therapeutics against osteolytic diseases.

Keywords: cell-based assay; compound solubility; computer-aided drug discovery; small-molecule inhibitor; synthesis; toxicity evaluation; virtual screening.

MeSH terms

  • Bone Resorption* / drug therapy
  • Cell Differentiation
  • Humans
  • I-kappa B Proteins
  • NF-kappa B / pharmacology
  • NFATC Transcription Factors
  • Osteoclasts
  • Osteogenesis* / drug effects
  • RANK Ligand* / antagonists & inhibitors
  • Structure-Activity Relationship

Substances

  • I-kappa B Proteins
  • NF-kappa B
  • NFATC Transcription Factors
  • RANK Ligand