Phylogenetic Analysis of Two New Mitochondrial Genomes of Singapora shinshana and Seriana bacilla from the Karst Region of Southwest China

Genes (Basel). 2023 Jun 23;14(7):1318. doi: 10.3390/genes14071318.

Abstract

Leafhoppers have been identified as a serious threat to different plants. To explore the characteristics of mitogenomes and reveal the phylogenetic positions of two species in the Typhlocybinae, complete mitogenomes of Singapora shinshana and Seriana bacilla were sequenced and annotated for the first time with lengths of 15,402 bp and 15,383 bp, respectively. The two mitogenomes contained 13 PCGs, 22 tRNA genes and 2 rRNA genes. The genome content, gene order, nucleotide composition, codon usage and amino acid composition are similar to those of other typical mitogenomes of Typhlocybinae. All 13 PCGs started with ATN codons, except for atp8 (TTA) and nad5 (TTG). All tRNAs were folded into a typical cloverleaf secondary structure, except for tRNA-Ser1 and tRNA-Val. Moreover, phylogenetic trees were constructed and analyzed based on all the PCGs from 42 mitogenomes using maximum likelihood (ML) and Bayesian inference (BI) methods. The results supported that eleven subfamilies are all monophyletic groups, S. shinshana and S. bacilla are members of Erythroneurini, but S. shinshana and the genus Empoascanara have a very close relationship with ((((Empoascanara sipra+ Empoascanara wengangensis) + Empoascanara dwalata) + Empoascanara gracilis) + S. shinshana), and S. bacilla is closely related to the genus Mitjaevia ((Mitjaevia dworakowskae + Mitjaevia shibingensis) + S. bacilla). These results provide valuable information for future study of evolutionary relationships in Typhlocybinae.

Keywords: Karst; S. bacilla; S. shinshana; mitogenome; phylogenetic analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bayes Theorem
  • Genome, Mitochondrial* / genetics
  • Hemiptera* / genetics
  • Phylogeny
  • RNA, Transfer / chemistry
  • RNA, Transfer / genetics

Substances

  • RNA, Transfer

Grants and funding

This work was supported by the World Top Discipline Program of Guizhou Province: Karst Ecoenvironment Sciences (No. 125 2019 Qianjiao Keyan Fa); Science and Technology Project of Guiyang City ([2020]7-18); Innovation Group Project of the Education Department of Guizhou Province ([2021]013); Project for Regional Top Discipline Construction of Guizhou Province: Ecology in Guiyang University (Qian Jiao Keyan Fa [2017]85); National Natural Science Foundation of China (32260120); Natural Science Foundation of Guizhou Province (Qiankehejichu-ZK [2023] General 257).