Genome-wide data suggest a revision in management of the Caspian Sea trout Salmo caspius

PLoS One. 2023 Jul 20;18(7):e0287777. doi: 10.1371/journal.pone.0287777. eCollection 2023.

Abstract

Salmo caspius Kessler, 1877 is one of the most commercially important species of Salmonidae in the southern basin of the Caspian Sea. The occurrence of its wild populations has undergone sever reduction during the last years. In spite of the yearly restocking activity, still no progress on the recovery of its wild population has been observed. Hence, the present study was done in order to assess the efficiency of the current restocking activity in the southern Caspian basin in term of genetic diversity. DNA extracts of 32 S. caspius from four different groups were screened using 62621 genome-wide single nucleotide polymorphisms (SNP). The overal genetic diversity and Fst values were 0.18 and 0.08, respectively. Considering the observed admixture pattern and the positive values for inbreeding coeficient it seems that S. caspius suffers from its small effective population size. In order to obtain the maximum performance, alonside with expanding the size of brood stocks, rehabilitation of the habitats and spawning rivers of this nationally endangered species is of great importance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Caspian Sea
  • Population Density
  • Salmo salar*
  • Trout* / genetics

Grants and funding

We are grateful to Agricultural Research, Education and Extension Organization (AREEO) for providing the required financial and technical resources. MZ was the main recipient of the funding award. The identification number for this funding is: 134-05-0557-008-94006-940029. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.