Direct observation of coordinated assembly of individual native centromeric nucleosomes

EMBO J. 2023 Sep 4;42(17):e114534. doi: 10.15252/embj.2023114534. Epub 2023 Jul 20.

Abstract

Eukaryotic chromosome segregation requires the kinetochore, a megadalton-sized machine that forms on specialized centromeric chromatin containing CENP-A, a histone H3 variant. CENP-A deposition requires a chaperone protein HJURP that targets it to the centromere, but it has remained unclear whether HJURP has additional functions beyond CENP-A targeting and why high AT DNA content, which disfavors nucleosome assembly, is widely conserved at centromeres. To overcome the difficulties of studying nucleosome formation in vivo, we developed a microscopy assay that enables direct observation of de novo centromeric nucleosome recruitment and maintenance with single molecule resolution. Using this assay, we discover that CENP-A can arrive at centromeres without its dedicated centromere-specific chaperone HJURP, but stable incorporation depends on HJURP and additional DNA-binding proteins of the inner kinetochore. We also show that homopolymer AT runs in the yeast centromeres are essential for efficient CENP-A deposition. Together, our findings reveal requirements for stable nucleosome formation and provide a foundation for further studies of the assembly and dynamics of native kinetochore complexes.

Keywords: TIRF microscopy; centromere; centromeric nucleosome; chromosome segregation; kinetochore.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Autoantigens / genetics
  • Autoantigens / metabolism
  • Centromere / genetics
  • Centromere / metabolism
  • Centromere Protein A / genetics
  • Centromere Protein A / metabolism
  • Chromosomal Proteins, Non-Histone* / genetics
  • Chromosomal Proteins, Non-Histone* / metabolism
  • Nucleosomes*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism

Substances

  • Nucleosomes
  • Centromere Protein A
  • Chromosomal Proteins, Non-Histone
  • Autoantigens