HDAC inhibition delays photoreceptor loss in Pde6b mutant mice of retinitis pigmentosa: insights from scRNA-seq and CUT&Tag

PeerJ. 2023 Jul 12:11:e15659. doi: 10.7717/peerj.15659. eCollection 2023.

Abstract

Purpose: This research aimed to ascertain the neuroprotective effect of histone deacetylase (HDAC) inhibition on retinal photoreceptors in Pde6brd1 mice, a model of retinitis pigmentosa (RP).

Methods: Single-cell RNA-sequencing (scRNA-seq) explored HDAC and poly (ADP-ribose) polymerase (PARP)-related gene expression in both Pde6b-mutant rd1 and wild-type (WT) mice. The CUT&Tag method was employed to examine the functions of HDAC in rd1 mice. Organotypic retinal explant cultures from WT and rd1 mice were exposed to the HDAC inhibitor SAHA (suberoylanilide hydroxamic acid) postnatally, from day 5 to day 11. The terminal deoxynucleotidyl transferase-mediated nick-end labeling (TUNEL) assay was applied to quantify the percentage of photoreceptor loss in the outer nuclear layer (ONL). HDAC activity was confirmed to be inhibited by SAHA through an HDAC activity assay. Moreover, the study evaluated PARP activity, a key driver of the initial response to DNA damage during photoreceptor degeneration, following HDAC inhibition.

Results: The scRNA-seq revealed that diverse roles of HDAC and PARP isoforms in photoreceptor cell death. HDAC-related genes appeared to regulate cell death and primary immunodeficiency. Alterations in HDAC activity were consistent with the TUNEL-positive cells in the ONL at different time points. Notably, SAHA significantly postponed photoreceptor loss and decreased HDAC and PARP activity, thereby implicating both in the same degenerative pathway.

Conclusions: This study highlights that the interaction between HDAC inhibition and PARP can delay photoreceptor cell death, proposing a promising therapeutic approach for RP.

Keywords: Cell death mechanisms; Hereditary retinal neurodegenerative disorders; Histone deacetylases; Photoreceptor cells; Poly (ADP-ribose) polymerases; Retinitis pigmentosa.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Histone Deacetylases* / genetics
  • Mice
  • Photoreceptor Cells / metabolism
  • Poly(ADP-ribose) Polymerase Inhibitors / pharmacology
  • Poly(ADP-ribose) Polymerases / genetics
  • Retinitis Pigmentosa* / drug therapy
  • Single-Cell Gene Expression Analysis
  • Vorinostat / pharmacology

Substances

  • Histone Deacetylases
  • Poly(ADP-ribose) Polymerase Inhibitors
  • Poly(ADP-ribose) Polymerases
  • Vorinostat

Grants and funding

This research was funded by the National Natural Science Foundation of China (No. 82260213, 81960180), the Key Project of Yunnan Fundamental Research Projects (202301AS070046), the Medical Leading Talents Training Program of Yunnan Provincial Health Commission (L-2019029), the Joint Project of Yunnan Provincial Department of Science and Technology, Kunming Medical University on Applied Basic Research (No. 202001AY070001-165, 202301AY070001-184), and the Scientific Research Fund of Education Department of Yunnan Province (No. 2023J0050, 2023J0049). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.