Landmark-Assisted Anatomy-Sensitive Retinal Vessel Segmentation Network

Diagnostics (Basel). 2023 Jul 4;13(13):2260. doi: 10.3390/diagnostics13132260.

Abstract

Automatic retinal vessel segmentation is important for assisting clinicians in diagnosing ophthalmic diseases. The existing deep learning methods remain constrained in instance connectivity and thin vessel detection. To this end, we propose a novel anatomy-sensitive retinal vessel segmentation framework to preserve instance connectivity and improve the segmentation accuracy of thin vessels. This framework uses TransUNet as its backbone and utilizes self-supervised extracted landmarks to guide network learning. TransUNet is designed to simultaneously benefit from the advantages of convolutional and multi-head attention mechanisms in extracting local features and modeling global dependencies. In particular, we introduce contrastive learning-based self-supervised extraction anatomical landmarks to guide the model to focus on learning the morphological information of retinal vessels. We evaluated the proposed method on three public datasets: DRIVE, CHASE-DB1, and STARE. Our method demonstrates promising results on the DRIVE and CHASE-DB1 datasets, outperforming state-of-the-art methods by improving the F1 scores by 0.36% and 0.31%, respectively. On the STARE dataset, our method achieves results close to the best-performing methods. Visualizations of the results highlight the potential of our method in maintaining topological continuity and identifying thin blood vessels. Furthermore, we conducted a series of ablation experiments to validate the effectiveness of each module in our model and considered the impact of image resolution on the results.

Keywords: TransUNet self-supervised landmark; contrastive learning; retinal vessel segmentation.

Grants and funding

This research received no external funding.