Genomic and phenotypic characterization of Pseudomonas sp. GOM7, a novel marine bacterial species with antimicrobial activity against multidrug-resistant Staphylococcus aureus

PLoS One. 2023 Jul 13;18(7):e0288504. doi: 10.1371/journal.pone.0288504. eCollection 2023.

Abstract

Antimicrobial resistance (AMR) represents a serious threat to global health. The development of new drugs to combat infections caused by bacteria resistant to multiple or even all available antibiotics is urgent. Most antibiotics used up to date have been identified from soil microorganisms. The marine environment represents an alternative source with great potential for the identification of microorganisms that produce bioactive molecules, including antibiotics. In this study, we analyzed the antibacterial activity of a collection of 82 bacterial strains isolated from marine water and sediment samples collected from the Southwestern Gulf of Mexico. Eight of the marine isolates inhibited the growth of different pathogenic bacteria, seven of which were identified as presumptive Pseudomonas aeruginosa. Interestingly, genome sequencing and phylogenetic analysis revealed that the remaining marine isolate showing antibacterial activity is a novel Pseudomonas species that we denominated Pseudomonas sp. GOM7, which was not pathogenic in the Galleria mellonella infection model in the conditions tested. Notably, Pseudomonas sp. GOM7 inhibited the growth of multidrug and methicillin-resistant strains of the priority pathogen Staphylococcus aureus. Our results show that the anti-S. aureus compound(s) produced by Pseudomonas sp. GOM7 can be extracted from the culture supernatant of this bacterium with the organic solvent ethyl acetate. Annotation of the Pseudomonas sp. GOM7 genome revealed the presence of several biosynthetic gene clusters predicted to code for possible antimicrobial compounds. Our results further highlight the potential of bacteria from the Gulf of Mexico as a source of novel antimicrobials.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Bacteria
  • Genomics
  • Methicillin-Resistant Staphylococcus aureus* / genetics
  • Microbial Sensitivity Tests
  • Phylogeny
  • Pseudomonas / genetics
  • Pseudomonas aeruginosa / genetics
  • Staphylococcus aureus* / genetics

Substances

  • Anti-Bacterial Agents

Grants and funding

This work was supported by grants from Consejo Nacional de Ciencia y Tecnología (CONACYT) / México (PN 2017-01-5182) to V.H.B and from CONACYT–Mexican Ministry of Energy- Hydrocarbon Trust, project 201441 to L.P.-L. L.E.R.-G. and J.R.-V. are doctoral students enrolled in the Programa de Doctorado en Ciencias Bioquímicas, Universidad Nacional Autónoma de México (UNAM), and received predoctoral fellowships from CONACYT (818121 and 965003, respectively). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.