Illustrated keys and a DNA barcode reference library of the amphibians and terrestrial reptiles (Amphibia, Reptilia) of São Tomé and Príncipe (Gulf of Guinea, West Africa)

Zookeys. 2023 Jun 27:1168:41-75. doi: 10.3897/zookeys.1168.101334. eCollection 2023.

Abstract

The herpetofauna of São Tomé and Príncipe consists of nine species of amphibians, all endemic, and 21 species of terrestrial reptiles, of which 17 are endemic. Our current knowledge regarding its natural history, ecology, and distribution is limited. Here two important tools are provided to support researchers, conservationists, and local authorities in the identification of the country's herpetofauna: an illustrated key to the herpetofauna of the two islands and surroundings islets and a DNA barcode reference library. The keys allow a rapid and unambiguous morphological identification of all occurring species. The DNA barcodes for the entire herpetofauna of the country were produced from 79 specimens, all of which are deposited in museum collections. The barcodes generated are available in online repositories and can be used to provide unambiguous molecular identification of most of the species. Future applications and use of these tools are briefly discussed.

Keywords: Biological surveys; Cytochrome c oxidase subunit I (COI); DNA metabarcoding; Herpetofauna; Oceanic Islands; conservation; environmental DNA.

Grants and funding

TROPIBIO NORTE-01-0145-FEDER-000046, supported by Norte Portugal Regional Operational Programme (NORTE2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). European Union through the ‘Landscape Management in São Tomé and Príncipe’ project (ENV/2020/420-182) and from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 854248 Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) of the Ministry of Education of Brazil, under the Programa Institucional de Internacionalização (PRINT), process number 88887.695166/2022-00