A systematic CRISPR screen reveals redundant and specific roles for Dscam1 isoform diversity in neuronal wiring

PLoS Biol. 2023 Jul 6;21(7):e3002197. doi: 10.1371/journal.pbio.3002197. eCollection 2023 Jul.

Abstract

Drosophila melanogaster Down syndrome cell adhesion molecule 1 (Dscam1) encodes 19,008 diverse ectodomain isoforms via the alternative splicing of exon 4, 6, and 9 clusters. However, whether individual isoforms or exon clusters have specific significance is unclear. Here, using phenotype-diversity correlation analysis, we reveal the redundant and specific roles of Dscam1 diversity in neuronal wiring. A series of deletion mutations were performed from the endogenous locus harboring exon 4, 6, or 9 clusters, reducing to 396 to 18,612 potential ectodomain isoforms. Of the 3 types of neurons assessed, dendrite self/non-self discrimination required a minimum number of isoforms (approximately 2,000), independent of exon clusters or isoforms. In contrast, normal axon patterning in the mushroom body and mechanosensory neurons requires many more isoforms that tend to associate with specific exon clusters or isoforms. We conclude that the role of the Dscam1 diversity in dendrite self/non-self discrimination is nonspecifically mediated by its isoform diversity. In contrast, a separate role requires variable domain- or isoform-related functions and is essential for other neurodevelopmental contexts, such as axonal growth and branching. Our findings shed new light on a general principle for the role of Dscam1 diversity in neuronal wiring.

MeSH terms

  • Animals
  • Cell Adhesion Molecule-1 / genetics
  • Cell Adhesion Molecule-1 / metabolism
  • Cell Adhesion Molecules / genetics
  • Cell Adhesion Molecules / metabolism
  • Clustered Regularly Interspaced Short Palindromic Repeats
  • Down Syndrome* / genetics
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Drosophila melanogaster / metabolism
  • Neurons / metabolism
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism

Substances

  • Drosophila Proteins
  • Cell Adhesion Molecule-1
  • Cell Adhesion Molecules
  • Protein Isoforms

Grants and funding

This work was supported by research grants from the National Key Research and Development Program of China (2021YFE0114900 to Y.J.), the National Natural Science Foundation of China (91940303 and 91740104 to Y.J.; 31871461 and 31671510 to H.H.; 32201054 to H.D.), the Natural Science Foundation of Zhejiang Province (LD21C050002 to Y.J.), and the Starry Night Science Fund at Shanghai Institute for Advanced Study of Zhejiang University (SN-ZJU-SIAS-009 to Y.J.).The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.