The Brain/MINDS Marmoset Connectivity Resource: An open-access platform for cellular-level tracing and tractography in the primate brain

PLoS Biol. 2023 Jun 29;21(6):e3002158. doi: 10.1371/journal.pbio.3002158. eCollection 2023 Jun.

Abstract

The primate brain has unique anatomical characteristics, which translate into advanced cognitive, sensory, and motor abilities. Thus, it is important that we gain insight on its structure to provide a solid basis for models that will clarify function. Here, we report on the implementation and features of the Brain/MINDS Marmoset Connectivity Resource (BMCR), a new open-access platform that provides access to high-resolution anterograde neuronal tracer data in the marmoset brain, integrated to retrograde tracer and tractography data. Unlike other existing image explorers, the BMCR allows visualization of data from different individuals and modalities in a common reference space. This feature, allied to an unprecedented high resolution, enables analyses of features such as reciprocity, directionality, and spatial segregation of connections. The present release of the BMCR focuses on the prefrontal cortex (PFC), a uniquely developed region of the primate brain that is linked to advanced cognition, including the results of 52 anterograde and 164 retrograde tracer injections in the cortex of the marmoset. Moreover, the inclusion of tractography data from diffusion MRI allows systematic analyses of this noninvasive modality against gold-standard cellular connectivity data, enabling detection of false positives and negatives, which provide a basis for future development of tractography. This paper introduces the BMCR image preprocessing pipeline and resources, which include new tools for exploring and reviewing the data.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Brain Mapping / methods
  • Brain* / diagnostic imaging
  • Brain* / physiology
  • Callithrix*
  • Diffusion Magnetic Resonance Imaging
  • Neural Pathways
  • Prefrontal Cortex / diagnostic imaging

Grants and funding

This work was supported by the program for Brain Mapping by Integrated Neurotechnologies for Disease Studies (Brain/MINDS) from the Japan Agency for Medical Research and Development AMED: grant number JP15dm0207001 to H.S., M.F.R., J.H., C.P., H.O., S.I., T.Y., A.W, grant number JP19dm0207088 to K.N., and grant number JP18dm0207030 to K.D. T.Y. is supported by Scientific Research on Innovative Areas (22123009) from MEXT, Japan. P.M. is supported by the National Science Centre of Poland (2019/35/D/NZ4/03031). The data from the Marmoset Brain Connectivity Atlas were obtained with support from Australian Research Council (DP110101200, DP140101968, CE140100007) and National Health and Medical Research Council (APP1194206) to MGPR. JSPS KAKENHI (grant numbers JP22H05163 and JP22H05154 to K.N., JP20H03630 to J.H., \ JP22H04998 to S.I., and JP22K15658 to C.P.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.