Development and Application of Real-Time PCR-Based Screening for Identification of Omicron SARS-CoV-2 Variant Sublineages

Genes (Basel). 2023 Jun 2;14(6):1218. doi: 10.3390/genes14061218.

Abstract

The Omicron strain is currently the main dominant variant of SARS-CoV-2, with a large number of sublineages. In this article, we present our experience in tracing it in Russia using molecular diagnostic methods. For this purpose, different approaches were used; for example, we developed multiprimer panels for RT-PCR and Sanger and NGS sequencing methods. For the centralized collection and analysis of samples, the VGARus database was developed, which currently includes more than 300,000 viral sequences.

Keywords: Omicron; RT-PCR; SARS-CoV-2 variants; surveillance.

MeSH terms

  • COVID-19 Testing
  • COVID-19* / diagnosis
  • COVID-19* / genetics
  • Databases, Factual
  • Humans
  • Real-Time Polymerase Chain Reaction
  • SARS-CoV-2 / genetics

Supplementary concepts

  • SARS-CoV-2 variants

Grants and funding

This research received no external funding.