A Systematic Review on Quiescent State Research Approaches in S. cerevisiae

Cells. 2023 Jun 12;12(12):1608. doi: 10.3390/cells12121608.

Abstract

Quiescence, the temporary and reversible arrest of cell growth, is a fundamental biological process. However, the lack of standardization in terms of reporting the experimental details of quiescent cells and populations can cause confusion and hinder knowledge transfer. We employ the systematic review methodology to comprehensively analyze the diversity of approaches used to study the quiescent state, focusing on all published research addressing the budding yeast Saccharomyces cerevisiae. We group research articles into those that consider all cells comprising the stationary-phase (SP) population as quiescent and those that recognize heterogeneity within the SP by distinguishing phenotypically distinct subpopulations. Furthermore, we investigate the chronological age of the quiescent populations under study and the methods used to induce the quiescent state, such as gradual starvation or abrupt environmental change. We also assess whether the strains used in research are prototrophic or auxotrophic. By combining the above features, we identify 48 possible experimental setups that can be used to study quiescence, which can be misleading when drawing general conclusions. We therefore summarize our review by proposing guidelines and recommendations pertaining to the information included in research articles. We believe that more rigorous reporting on the features of quiescent populations will facilitate knowledge transfer within and between disciplines, thereby stimulating valuable scientific discussion.

Keywords: G0; budding yeast; cell cycle; dormancy; eukaryotic cell model; growth arrest; quiescence; stationary phase.

Publication types

  • Systematic Review
  • Review
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Cycle
  • Cell Division
  • Cell Proliferation
  • Saccharomyces cerevisiae Proteins* / genetics
  • Saccharomyces cerevisiae*

Substances

  • Saccharomyces cerevisiae Proteins

Grants and funding

The work was funded by the National Science Centre, Poland, via an OPUS grant to D.W.-S. (grant number 2017/25/B/NZ8/01035), the programme “Excellence Initiative–Research University” at the Jagiellonian University in Kraków, Poland (grant number U1U/W18/NO/28.07) to M.O., the Priority Research Area BioS under the program “Excellence Initiative–Research University at Jagiellonian University” in Krakow (grant number U1U/P03/NO/03.32) to B.J.S., the Faculty of Biology of the Jagiellonian University research subsidies (grant number N18/DBS/000019 to M.O. and D.W.-S.), the Polish National Agency of Academic Exchange (grant number PPN/PPO/2018/00021/U/00001) to B.J.S. and the EMBO Installation Grant (B.J.S.). The open-access publication of this article was funded by the programme “Excellence Initiative—Research University” at the Faculty of Biology of the Jagiellonian University in Krakow.