Structural basis for proapoptotic activation of Bak by the noncanonical BH3-only protein Pxt1

PLoS Biol. 2023 Jun 14;21(6):e3002156. doi: 10.1371/journal.pbio.3002156. eCollection 2023 Jun.

Abstract

Bak is a critical executor of apoptosis belonging to the Bcl-2 protein family. Bak contains a hydrophobic groove where the BH3 domain of proapoptotic Bcl-2 family members can be accommodated, which initiates its activation. Once activated, Bak undergoes a conformational change to oligomerize, which leads to mitochondrial destabilization and the release of cytochrome c into the cytosol and eventual apoptotic cell death. In this study, we investigated the molecular aspects and functional consequences of the interaction between Bak and peroxisomal testis-specific 1 (Pxt1), a noncanonical BH3-only protein exclusively expressed in the testis. Together with various biochemical approaches, this interaction was verified and analyzed at the atomic level by determining the crystal structure of the Bak-Pxt1 BH3 complex. In-depth biochemical and cellular analyses demonstrated that Pxt1 functions as a Bak-activating proapoptotic factor, and its BH3 domain, which mediates direct intermolecular interaction with Bak, plays a critical role in triggering apoptosis. Therefore, this study provides a molecular basis for the Pxt1-mediated novel pathway for the activation of apoptosis and expands our understanding of the cell death signaling coordinated by diverse BH3 domain-containing proteins.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Apoptosis / physiology
  • BH3 Interacting Domain Death Agonist Protein / metabolism
  • Carrier Proteins / metabolism
  • Humans
  • Male
  • Mitochondria / metabolism
  • Proto-Oncogene Proteins c-bcl-2*
  • bcl-2-Associated X Protein

Substances

  • bcl-2-Associated X Protein
  • BH3 Interacting Domain Death Agonist Protein
  • Carrier Proteins
  • Proto-Oncogene Proteins c-bcl-2

Grants and funding

This study was supported by the National Research Foundation of Korea Grants NRF-2019M3E5D6063955 (to B.K.) and NRF-2020R1C1C1006833 (to J.S.), by the National Research Council of Science and Technology of Korea Grant CRC22011-300 (to J.S.), and by the KRIBB Research Initiative Programs KGM9952314 (to B.K.), which were funded by the Ministry of Science and ICT (MSIT) of Republic of Korea. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.