Enhancing the Catalytic Activity of Thermo-Asparaginase from Thermococcus sibiricus by a Double Mesophilic-like Mutation in the Substrate-Binding Region

Int J Mol Sci. 2023 Jun 1;24(11):9632. doi: 10.3390/ijms24119632.

Abstract

L-asparaginases (L-ASNases) of microbial origin are the mainstay of blood cancer treatment. Numerous attempts have been performed for genetic improvement of the main properties of these enzymes. The substrate-binding Ser residue is highly conserved in L-ASNases regardless of their origin or type. However, the residues adjacent to the substrate-binding Ser differ between mesophilic and thermophilic L-ASNases. Based on our suggestion that the triad, including substrate-binding Ser, either GSQ for meso-ASNase or DST for thermo-ASNase, is tuned for efficient substrate binding, we constructed a double mutant of thermophilic L-ASNase from Thermococcus sibiricus (TsA) with a mesophilic-like GSQ combination. In this study, the conjoint substitution of two residues adjacent to the substrate-binding Ser55 resulted in a significant increase in the activity of the double mutant, reaching 240% of the wild-type enzyme activity at the optimum temperature of 90 °C. The mesophilic-like GSQ combination in the rigid structure of the thermophilic L-ASNase appears to be more efficient in balancing substrate binding and conformational flexibility of the enzyme. Along with increased activity, the TsA D54G/T56Q double mutant exhibited enhanced cytotoxic activity against cancer cell lines with IC90 values from 2.8- to 7.4-fold lower than that of the wild-type enzyme.

Keywords: L-asparaginase; enzymatic activity; extremophilic enzyme; hyperthermophile; mutagenesis; substrate-binding.

MeSH terms

  • Asparaginase* / chemistry
  • Asparaginase* / genetics
  • Bacterial Proteins* / chemistry
  • Bacterial Proteins* / genetics
  • Binding Sites
  • Enzyme Stability / genetics
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Substrate Specificity / genetics
  • Thermococcus* / enzymology

Substances

  • Asparaginase
  • Bacterial Proteins