A method for tritiation of iboxamycin permits measurement of its ribosomal binding

Bioorg Med Chem Lett. 2023 Jul 15:91:129364. doi: 10.1016/j.bmcl.2023.129364. Epub 2023 Jun 7.

Abstract

Hydrogen-tritium exchange is widely employed for radioisotopic labeling of molecules of biological interest but typically involves the metal-promoted exchange of sp2-hybridized carbon-hydrogen bonds, a strategy that is not directly applicable to the antibiotic iboxamycin, which possesses no such bonds. We show that ruthenium-induced 2'-epimerization of 2'-epi-iboxamycin in HTO (200 mCi) of low specific activity (10 Ci/g, 180 mCi/mmol) at 80 °C for 18 h affords after purification tritium-labeled iboxamycin (3.55 µCi) with a specific activity of 53 mCi/mmol. Iboxamycin displayed an apparent inhibition constant (Ki, app) of 41 ± 30 nM towards Escherichia coli ribosomes, binding approximately 70-fold more tightly than the antibiotic clindamycin (Ki, app = 2.7 ± 1.1 µM).

Keywords: Bacterial ribosome; Clindamycin; Iboxamycin; Lincosamide; Radiolabeling; Tritium.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Anti-Bacterial Agents* / chemistry
  • Clindamycin* / chemistry
  • Clindamycin* / metabolism
  • Hydrogen
  • Ruthenium / chemistry
  • Tritium / chemistry

Substances

  • Anti-Bacterial Agents
  • Clindamycin
  • Hydrogen
  • iboxamycin
  • Tritium
  • Ruthenium