Meta-analysis of single-cell and single-nucleus transcriptomics reveals kidney cell type consensus signatures

Sci Data. 2023 Jun 6;10(1):361. doi: 10.1038/s41597-023-02209-9.

Abstract

While the amount of studies involving single-cell or single-nucleus RNA-sequencing technologies grows exponentially within the biomedical research area, the kidney field requires reference transcriptomic signatures to allocate each cluster its matching cell type. The present meta-analysis of 39 previously published datasets, from 7 independent studies, involving healthy human adult kidney samples, offers a set of 24 distinct consensus kidney cell type signatures. The use of these signatures may help to assure the reliability of cell type identification in future studies involving single-cell and single-nucleus transcriptomics while improving the reproducibility in cell type allocation.

Publication types

  • Meta-Analysis

MeSH terms

  • Adult
  • Datasets as Topic
  • Gene Expression Profiling
  • Humans
  • Kidney*
  • Reproducibility of Results
  • Single-Cell Gene Expression Analysis
  • Transcriptome*