One-bond 13C-13C spin-coupling constants in saccharides: a comparison of experimental and calculated values by density functional theory using solid-state 13C NMR and X-ray crystallography

Timothy Tetrault; Reagan J Meredith; Mi-Kyung Yoon; Christopher Canizares; Allen G Oliver; Ian Carmichael; Anthony S Serianni

doi:10.1039/d2cp05363b

One-bond ¹³C-¹³C spin-coupling constants in saccharides: a comparison of experimental and calculated values by density functional theory using solid-state ¹³C NMR and X-ray crystallography

Phys Chem Chem Phys. 2023 Jun 15;25(23):16048-16059. doi: 10.1039/d2cp05363b.

Authors

Timothy Tetrault¹, Reagan J Meredith¹, Mi-Kyung Yoon^{1

2}, Christopher Canizares¹, Allen G Oliver³, Ian Carmichael⁴, Anthony S Serianni¹

Affiliations

¹ Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556-5670, USA. aseriann@nd.edu.
² Omicron Biochemicals, Inc., South Bend, IN 46617, USA.
³ Molecular Structure Facility, University of Notre Dame, Notre Dame, IN 46556-5670, USA.
⁴ Radiation Laboratory, University of Notre Dame, Notre Dame, IN 46556-5670, USA.

PMID: 37272776
DOI: 10.1039/d2cp05363b

Abstract

Methyl aldohexopyranosides were ¹³C-labeled at contiguous carbons, crystallized, and studied by single-crystal X-ray crystallography and solid-state ¹³C nuclear magnetic resonance (NMR) spectroscopy to examine the degree to which density functional theory (DFT) can calculate one-bond ¹³C-¹³C spin-coupling constants (¹J_CC) in saccharides with sufficient accuracy to permit their use in MA'AT analysis, a newly-reported hybrid DFT/NMR method that provides probability distributions of molecular torsion angles in solution (Zhang et al., J. Phys. Chem. B, 2017, 121, 3042-3058; Meredith et al., J. Chem. Inf. Model., 2022, 62, 3135-3141). Experimental ¹J_CC values in crystalline samples of the doubly ¹³C-labeled compounds were measured by solid-state ¹³C NMR and compared to those calculated from five different DFT models: (1) ¹J_CC values calculated from single structures identical to those observed in crystalline samples by X-ray crystallography (all atom refinement); (2) ¹J_CC values calculated from the single structures in (1) but after Hirshfeld atom refinement (HAR); (3) ¹J_CC values calculated from the single structures in (1) after DFT-optimization of hydrogen atoms only; and (4 and 5) ¹J_CC values calculated in rotamers of torsion angle θ₂ (C1-C2-O2-O2H) or ω (C4-C5-C6-O6) from which either specific or generalized parameterized equations were obtained and used to calculate ¹J_CC values in the specific θ₂ or ω rotamers observed in crystalline samples. Good qualitative agreement was observed between calculated ¹J_CC values and those measured by solid-state ¹³C NMR regardless of the DFT model, but in no cases were calculated ¹J_CC values quantitative, differing (over-estimated) on average by 4-5% from experimental values. These findings, and those reported recently from solution NMR studies (Tetrault et al., J. Phys. Chem. B 2022, 126, 9506-9515), indicate that improvements in DFT calculations are needed before calculated ¹J_CC values can be used directly as reliable constraints in MA'AT analyses of saccharides in solution.