Discerning of isatin-based monoamine oxidase (MAO) inhibitors for neurodegenerative disorders by exploiting 2D, 3D-QSAR modelling and molecular dynamics simulation

J Biomol Struct Dyn. 2024 Mar;42(5):2328-2340. doi: 10.1080/07391102.2023.2214216. Epub 2023 Jun 1.

Abstract

Almost a billion people worldwide suffer from neurological disorders, which pose public health challenges. An important enzyme that is well-known for many neurodegenerative illnesses is monoamine oxidase (MAO). Although several promising drugs for the treatment of MAO inhibition have recently been examined, it is still necessary to identify the precise structural requirements for robust efficacy. Atom-based, field-based, and GA-MLR (genetic algorithm multiple linear regression) models were created for this investigation. All of the models have strong statistical (R2 and Q2) foundations because of both internal and external validation. Our dataset's molecule has a higher docking score than safinamide, a well-known and co-crystallized MAO-B inhibitor, as we also noticed. Using the SwissSimilarity platform, we further inquired which of our docked molecules would be the best for screening. We chose ZINC000016952895 as the screen molecule with the best binding docking score (XP score = -13.3613). Finally, the 100 ns for the ZINC000016952895-MAO-B complex in our MD investigations is stable. For compounds that we hit, also anticipate ADME properties. Our research revealed that the successful compound ZINC000016952895 might pave the way for the future development of MAO inhibitors for the treatment of neurological disease.Communicated by Ramaswamy H. Sarma.

Keywords: MAO-A; MAO-B; Monoamine oxidase inhibitor; QSAR modelling; molecular docking; molecular dynamics.

MeSH terms

  • Humans
  • Isatin*
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • Monoamine Oxidase / chemistry
  • Monoamine Oxidase Inhibitors / chemistry
  • Monoamine Oxidase Inhibitors / metabolism
  • Monoamine Oxidase Inhibitors / pharmacology
  • Neurodegenerative Diseases* / drug therapy
  • Quantitative Structure-Activity Relationship
  • Structure-Activity Relationship

Substances

  • Monoamine Oxidase Inhibitors
  • Isatin
  • Monoamine Oxidase