Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

PLoS Comput Biol. 2023 May 30;19(5):e1011161. doi: 10.1371/journal.pcbi.1011161. eCollection 2023 May.

Abstract

In the plant sciences, results of laboratory studies often do not translate well to the field. To help close this lab-field gap, we developed a strategy for studying the wiring of plant traits directly in the field, based on molecular profiling and phenotyping of individual plants. Here, we use this single-plant omics strategy on winter-type Brassica napus (rapeseed). We investigate to what extent early and late phenotypes of field-grown rapeseed plants can be predicted from their autumnal leaf gene expression, and find that autumnal leaf gene expression not only has substantial predictive power for autumnal leaf phenotypes but also for final yield phenotypes in spring. Many of the top predictor genes are linked to developmental processes known to occur in autumn in winter-type B. napus accessions, such as the juvenile-to-adult and vegetative-to-reproductive phase transitions, indicating that the yield potential of winter-type B. napus is influenced by autumnal development. Our results show that single-plant omics can be used to identify genes and processes influencing crop yield in the field.

MeSH terms

  • Brassica napus* / genetics
  • Gene Expression
  • Phenotype
  • Plant Leaves / genetics

Grants and funding

SDM is a fellow of the Research Foundation-Flanders (FWO, grant 1146319N). The work of KB was supported by a Fulbright U.S. student award. The work of SH in the lab of SM was supported through a research collaboration with Inari Agriculture NV funded in part by Flanders Innovation & Entrepreneurship (VLAIO, grant HBC.2019.2814). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.