Interplay between PML NBs and HIRA for H3.3 dynamics following type I interferon stimulus

Elife. 2023 May 25:12:e80156. doi: 10.7554/eLife.80156.

Abstract

Promyelocytic leukemia Nuclear Bodies (PML NBs) are nuclear membrane-less organelles physically associated with chromatin underscoring their crucial role in genome function. The H3.3 histone chaperone complex HIRA accumulates in PML NBs upon senescence, viral infection or IFN-I treatment in primary cells. Yet, the molecular mechanisms of this partitioning and its function in regulating histone dynamics have remained elusive. By using specific approaches, we identify intermolecular SUMO-SIM interactions as an essential mechanism for HIRA recruitment in PML NBs. Hence, we describe a role of PML NBs as nuclear depot centers to regulate HIRA distribution in the nucleus, dependent both on SP100 and DAXX/H3.3 levels. Upon IFN-I stimulation, PML is required for interferon-stimulated genes (ISGs) transcription and PML NBs become juxtaposed to ISGs loci at late time points of IFN-I treatment. HIRA and PML are necessary for the prolonged H3.3 deposition at the transcriptional end sites of ISGs, well beyond the peak of transcription. Though, HIRA accumulation in PML NBs is dispensable for H3.3 deposition on ISGs. We thus uncover a dual function for PML/PML NBs, as buffering centers modulating the nuclear distribution of HIRA, and as chromosomal hubs regulating ISGs transcription and thus HIRA-mediated H3.3 deposition at ISGs upon inflammatory response.

Keywords: H3.3; PML nuclear bodies; chromosomes; gene expression; histone chaperones; human.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromatin
  • Histones / genetics
  • Humans
  • Interferon Type I* / genetics
  • Mice
  • Promyelocytic Leukemia Nuclear Bodies*
  • Transcription Factors / metabolism

Substances

  • Chromatin
  • HIRA protein, human
  • Hira protein, mouse
  • Histones
  • Interferon Type I
  • Transcription Factors

Associated data

  • GEO/GSE183937

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.