Inhibition of miR-200b-3p confers broad-spectrum resistance to viral infection by targeting TBK1

mBio. 2023 Aug 31;14(4):e0086723. doi: 10.1128/mbio.00867-23. Epub 2023 May 24.

Abstract

The host innate immune system's defense against viral infections depends heavily on type I interferon (IFN-I) production. Research into the mechanisms of virus-host interactions is essential for developing novel antiviral therapies. In this study, we compared the effect of the five members of the microRNA-200 (miR-200) family on IFN-I production during viral infection and found that miR-200b-3p displayed the most pronounced regulatory effect. During viral infection, we discovered that the transcriptional level of microRNA-200b-3p (miR-200b-3p) increased with the infection of influenza virus (IAV) and vesicular stomatitis virus (VSV), and miR-200b-3p production was modulated by the activation of the ERK and p38 pathways. We identified cAMP response element binding protein (CREB) as a novel transcription factor that binds to the miR-200b-3p promoter. MiR-200b-3p reduces NF-κB and IRF3-mediated IFN-I production by targeting the 3' untranslated region (3' UTR) of TBK1 mRNA. Applying miR-200b-3p inhibitor enhances IFN-I production in IAV and VSV-infected mouse models, thus inhibiting viral replication and improving mouse survival ratio. Importantly, in addition to IAV and VSV, miR-200b-3p inhibitors exhibited potent antiviral effects against multiple pathogenic viruses threatening human health worldwide. Overall, our study suggests that miR-200b-3p might be a potential therapeutic target for broad-spectrum antiviral therapy. IMPORTANCE The innate immune response mediated by type I interferon (IFN-I) is essential for controlling viral replication. MicroRNAs (miRNAs) have been found to regulate the IFN signaling pathway. In this study, we describe a novel function of miRNA-200b-3p in negatively regulating IFN-I production during viral infection. miRNA-200b-3p was upregulated by the MAPK pathway activated by IAV and VSV infection. The binding of miRNA-200b-3p to the 3' UTR of TBK1 mRNA reduced IFN-I activation mediated by IRF3 and NF-κB. Application of miR-200b-3p inhibitors exhibited potent antiviral effects against multiple RNA and DNA viruses. These results provide fresh insight into understanding the impact of miRNAs on host-virus interactions and reveal a potential therapeutic target for common antiviral intervention.

Keywords: TBK1; broad-spectrum; influenza virus; innate immunity; interferon; microRNA-200b-3p; viral infection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • Animals
  • Antiviral Agents / pharmacology
  • Humans
  • Interferon Type I* / genetics
  • Interferon Type I* / metabolism
  • Mice
  • MicroRNAs* / metabolism
  • NF-kappa B / metabolism
  • Protein Serine-Threonine Kinases / genetics
  • Virus Diseases* / genetics
  • Virus Replication

Substances

  • NF-kappa B
  • 3' Untranslated Regions
  • MicroRNAs
  • Interferon Type I
  • Antiviral Agents
  • TBK1 protein, human
  • Protein Serine-Threonine Kinases
  • MIRN200 microRNA, human