Enhancing the Conformational Stability of the cl-Par-4 Tumor Suppressor via Site-Directed Mutagenesis

Biomolecules. 2023 Apr 12;13(4):667. doi: 10.3390/biom13040667.

Abstract

Intrinsically disordered proteins play important roles in cell signaling, and dysregulation of these proteins is associated with several diseases. Prostate apoptosis response-4 (Par-4), an approximately 40 kilodalton proapoptotic tumor suppressor, is a predominantly intrinsically disordered protein whose downregulation has been observed in various cancers. The caspase-cleaved fragment of Par-4 (cl-Par-4) is active and plays a role in tumor suppression by inhibiting cell survival pathways. Here, we employed site-directed mutagenesis to create a cl-Par-4 point mutant (D313K). The expressed and purified D313K protein was characterized using biophysical techniques, and the results were compared to that of the wild-type (WT). We have previously demonstrated that WT cl-Par-4 attains a stable, compact, and helical conformation in the presence of a high level of salt at physiological pH. Here, we show that the D313K protein attains a similar conformation as the WT in the presence of salt, but at an approximately two times lower salt concentration. This establishes that the substitution of a basic residue for an acidic residue at position 313 alleviates inter-helical charge repulsion between dimer partners and helps to stabilize the structural conformation.

Keywords: circular dichroism (CD) spectroscopy; dynamic light scattering (DLS); intrinsically disordered proteins (IDPs); nuclear magnetic resonance (NMR) spectroscopy; prostate apoptosis response-4 (Par-4); site-directed mutagenesis; tumor suppressor.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Circular Dichroism
  • Genes, Tumor Suppressor
  • Humans
  • Intrinsically Disordered Proteins* / chemistry
  • Male
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Neoplasms*
  • Protein Conformation

Substances

  • Intrinsically Disordered Proteins