Factors shaping the gut microbiome of five species of lizards from different habitats

PeerJ. 2023 May 9:11:e15146. doi: 10.7717/peerj.15146. eCollection 2023.

Abstract

Background: Host-gut microbiota interactions are complex and can have a profound impact on the ecology and evolution of both counterparts. Several host traits such as systematics, diet and social behavior, and external factors such as prey availability and local environment are known to influence the composition and diversity of the gut microbiota.

Methods: In this study, we investigate the influence of systematics, sex, host size, and locality/habitat on gut microbiota diversity in five lizard species from two different sites in Portugal: Podarcis bocagei and Podarcis lusitanicus, living in syntopy in a rural area in northern Portugal (Moledo); the invasive Podarcis siculus and the native Podarcis virescens, living in sympatry in an urbanized environment (Lisbon); and the invasive Teira dugesii also living in an urban area (Lisbon). We also infer the potential microbial transmission occurring between species living in sympatry and syntopy. To achieve these goals, we use a metabarcoding approach to characterize the bacterial communities from the cloaca of lizards, sequencing the V4 region of the 16S rRNA.

Results: Habitat/locality was an important factor explaining differences in gut bacterial composition and structure, with species from urbanized environments having higher bacterial diversity. Host systematics (i.e., species) influenced gut bacterial community structure only in lizards from the urbanized environment. We also detected a significant positive correlation between lizard size and gut bacterial alpha-diversity in the invasive species P. siculus, which could be due to its higher exploratory behavior. Moreover, estimates of bacterial transmission indicate that P. siculus may have acquired a high proportion of local microbiota after its introduction. These findings confirm that a diverse array of host and environmental factors can influence lizards' gut microbiota.

Keywords: Bacterial transmission; Gut microbiota; Metabarcoding; Podarcis; Sympatry; Teira.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacteria
  • Gastrointestinal Microbiome* / genetics
  • Lizards* / genetics
  • Microbiota*
  • RNA, Ribosomal, 16S / genetics
  • Social Behavior

Substances

  • RNA, Ribosomal, 16S

Grants and funding

The work was supported by the European Union’s Horizon 2020 Research and Innovation Program under the Grant Agreement Number 857251; Raquel Xavier was supported by FCT under the Programa Operacional Potencial Humano–Quadro de Referência Estratégico Nacional funds from the European Social Fund and Portuguese Ministério da Educação e Ciência (2020.00854.CEECIND/CP1601/CT0001), Ana Pereira and Diana S. Vasconcelos were supported by FCT (AP: SFRH/BD/144928/2019; DV: 2022.13485.BD). This work was also supported by National Funds through FCT-Fundação para a Ciência e a Tecnologia and European Regional Development Fund (ERDF) through the COMPETE program in the scope of the project PTDC.07460.2022. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.