AI-Predicted mTOR Inhibitor Reduces Cancer Cell Proliferation and Extends the Lifespan of C. elegans

Int J Mol Sci. 2023 Apr 25;24(9):7850. doi: 10.3390/ijms24097850.

Abstract

The mechanistic target of rapamycin (mTOR) kinase is one of the top drug targets for promoting health and lifespan extension. Besides rapamycin, only a few other mTOR inhibitors have been developed and shown to be capable of slowing aging. We used machine learning to predict novel small molecules targeting mTOR. We selected one small molecule, TKA001, based on in silico predictions of a high on-target probability, low toxicity, favorable physicochemical properties, and preferable ADMET profile. We modeled TKA001 binding in silico by molecular docking and molecular dynamics. TKA001 potently inhibits both TOR complex 1 and 2 signaling in vitro. Furthermore, TKA001 inhibits human cancer cell proliferation in vitro and extends the lifespan of Caenorhabditis elegans, suggesting that TKA001 is able to slow aging in vivo.

Keywords: AI drug discovery; C. elegans; cancer; longevity; mTOR; rapalog.

MeSH terms

  • Animals
  • Artificial Intelligence
  • Caenorhabditis elegans / metabolism
  • Caenorhabditis elegans Proteins* / metabolism
  • Cell Proliferation
  • Humans
  • Longevity
  • MTOR Inhibitors
  • Molecular Docking Simulation
  • Neoplasms* / drug therapy
  • Sirolimus / pharmacology
  • TOR Serine-Threonine Kinases / metabolism

Substances

  • MTOR Inhibitors
  • TOR Serine-Threonine Kinases
  • Caenorhabditis elegans Proteins
  • Sirolimus
  • MTOR protein, human