Complete Genome Sequence Data of Pseudomonas bijieensis SP1 Associated with Root Soft Rot of Yam Bean

Plant Dis. 2023 May;107(5):1617-1619. doi: 10.1094/PDIS-10-22-2319-A. Epub 2023 May 11.

Abstract

Pseudomonas bijieensis is a newly established species with antifungal activity. Here, we report the high-quality and complete genome sequence for P. bijieensis strain SP1, created by hybrid assembly using both short reads and long reads. The length of the circular chromosome is about 6.67 Mb, with a GC content of 60.89%. Bioinformatic analyses revealed gene clusters for the biosynthesis of antimicrobial metabolites 2,4-diacetylphloroglucinol as well as bacterial secretion systems (type I to III and type V to VI). Interestingly, this strain can cause soft rot symptoms in the roots of yam bean, showing the potential to be a plant pathogen. The genomic data will be a valuable resource for exploring the virulence mechanism and antifungal activity of this strain.

Keywords: 2,4-diacetylphloroglucinol; Pachyrhizus erosus; Pseudomonas bijieensis; complete genome; pathogenicity.

MeSH terms

  • Antifungal Agents
  • Genome, Bacterial / genetics
  • Pachyrhizus* / genetics
  • Pseudomonas* / genetics
  • Virulence

Substances

  • Antifungal Agents