The SARS-CoV-2 papain-like protease suppresses type I interferon responses by deubiquitinating STING

Sci Signal. 2023 May 2;16(783):eadd0082. doi: 10.1126/scisignal.add0082. Epub 2023 May 2.

Abstract

The SARS-CoV-2 papain-like protease (PLpro), which has deubiquitinating activity, suppresses the type I interferon (IFN-I) antiviral response. We investigated the mechanism by which PLpro antagonizes cellular antiviral responses. In HEK392T cells, PLpro removed K63-linked polyubiquitin chains from Lys289 of the stimulator of interferon genes (STING). PLpro-mediated deubiquitination of STING disrupted the STING-IKKε-IRF3 complex that induces the production of IFN-β and IFN-stimulated cytokines and chemokines. In human airway cells infected with SARS-CoV-2, the combined treatment with the STING agonist diABZi and the PLpro inhibitor GRL0617 resulted in the synergistic inhibition of SARS-CoV-2 replication and increased IFN-I responses. The PLpros of seven human coronaviruses (SARS-CoV-2, SARS-CoV, MERS-CoV, HCoV-229E, HCoV-HKU1, HCoV-OC43, and HCoV-NL63) and four SARS-CoV-2 variants of concern (α, β, γ, and δ) all bound to STING and suppressed STING-stimulated IFN-I responses in HEK293T cells. These findings reveal how SARS-CoV-2 PLpro inhibits IFN-I signaling through STING deubiquitination and a general mechanism used by seven human coronaviral PLpros to dysregulate STING and to facilitate viral innate immune evasion. We also identified simultaneous pharmacological STING activation and PLpro inhibition as a potentially effective strategy for antiviral therapy against SARS-CoV-2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19 / immunology
  • Coronavirus Papain-Like Proteases* / metabolism
  • HEK293 Cells
  • Humans
  • Immune Evasion*
  • Interferon Type I* / immunology
  • Membrane Proteins* / metabolism
  • SARS-CoV-2 / physiology
  • Ubiquitination
  • Virus Replication

Substances

  • Interferon Type I
  • papain-like protease, SARS-CoV-2
  • Coronavirus Papain-Like Proteases
  • STING1 protein, human
  • Membrane Proteins
  • 5-amino-2-methyl-N-((R)-1-(1-naphthyl)ethyl)benzamide