Antigen discovery by bioinformatics analysis and peptide microarray for the diagnosis of cystic echinococcosis

PLoS Negl Trop Dis. 2023 Apr 12;17(4):e0011210. doi: 10.1371/journal.pntd.0011210. eCollection 2023 Apr.

Abstract

Background: Cystic echinococcosis (CE), caused by Echinococcus granulosus sensu lato, is a neglected zoonosis. Its diagnosis relies on imaging, supported by serology, while only imaging is useful for staging and follow-up. Since diagnostic tools and expertise are not widely available, new accurate and easily implementable assays for the diagnosis and follow-up of CE are highly needed.

Methodology/principal findings: We aimed to identify new E. granulosus antigens through a bioinformatics selection applied to the parasite genome, followed by peptide microarray screening and validation in ELISA, using independent panels of sera from patients with hepatic CE and clinically relevant controls. From 950 proteins selected in silico, 2,379 peptides were evaluated by microarray for IgG reactivity and eight candidates selected for validation. Reactivity to one peptide was significantly higher in the CE group (p = 0.044), but had suboptimal diagnostic accuracy.

Conclusions/significance: Here we performed bioinformatics analysis and peptide microarray for antigen discovery, useful for the diagnosis of CE. Eight candidates were selected and validated. Reactivity to one peptide associated to CE but had suboptimal diagnostic accuracy. Importantly, the database developed in this study may be used to identify other antigenic candidates for CE diagnosis and follow-up.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antigens, Helminth
  • Computational Biology
  • Echinococcosis* / diagnosis
  • Echinococcus granulosus*
  • Enzyme-Linked Immunosorbent Assay / methods
  • Humans
  • Peptides

Substances

  • Antigens, Helminth
  • Peptides

Grants and funding

This work was supported by grants from the Italian Ministry of Health Ricerca Finalizzata-Giovani Ricercatori “New diagnostic approaches for cystic echinococcosis through antigen discovery and detection of immune responses” [grant number GR-2016-02361497, Principal Investigator: LP; UO2: AV; UO3: DS] and Linea 1-Ricerca Corrente to INMI (DG), from the Italian Ministry of Health Ricerca Corrente L3P2 to Sacro Cuore Don Calabria Hospital (FT) and Dipartimenti di Eccellenza Program (2018-2022) to University of Pavia (GBB). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.