Naturally occurring substitution of an amino acid in a plant virus gene-silencing suppressor enhances viral adaptation to increasing thermal stress

PLoS Pathog. 2023 Apr 3;19(4):e1011301. doi: 10.1371/journal.ppat.1011301. eCollection 2023 Apr.

Abstract

Cereal yellow dwarf virus (CYDV-RPV) encodes a P0 protein that functions as a viral suppressor of RNA silencing (VSR). The strength of silencing suppression is highly variable among CYDV-RPV isolates. In this study, comparison of the P0 sequences of CYDV-RPV isolates and mutational analysis identified a single C-terminal amino acid that influenced P0 RNA-silencing suppressor activity. A serine at position 247 was associated with strong suppressor activity, whereas a proline at position 247 was associated with weak suppressor activity. Amino acid changes at position 247 did not affect the interaction of P0 with SKP1 proteins from Hordeum vulgare (barley) or Nicotiana benthamiana. Subsequent studies found P0 proteins containing a P247 residue were less stable than the P0 proteins containing an S247 residue. Higher temperatures contributed to the lower stability and in planta and the P247 P0 proteins were subject to degradation via the autophagy-mediated pathway. A P247S amino acid residue substitution in P0 increased CYDV-RPV replication after expression in agroinfiltrated plant leaves and increased viral pathogenicity of P0 generated from the heterologous Potato virus X expression vector system. Moreover, an S247 CYDV-RPV could outcompete the P247 CYDV-RPV in a mixed infection in natural host at higher temperature. These traits contributed to increased transmission by aphid vectors and could play a significant role in virus competition in warming climates. Our findings underscore the capacity of a plant RNA virus to adapt to climate warming through minor genetic changes in gene-silencing suppressor, resulting in the potential for disease persistence and prevalence.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / metabolism
  • Gene Silencing
  • Luteoviridae* / genetics
  • Luteoviridae* / metabolism
  • Nicotiana
  • Plant Diseases / genetics
  • Plant Viruses* / genetics
  • Plant Viruses* / metabolism
  • RNA Interference

Substances

  • Amino Acids

Grants and funding

This work was funded from the Startup Fund for Distinguished Scholars, Nanjing Agriculture University to YX (804009), a fund from State Key Laboratory for Biology of Plant Diseases and Insect Pests allocated to YX (SKLOF202205), and by a grant to SMG from National Institute of Food and Agriculture (grant number 2011-04037) allocated to SMG. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.