Studies on the active site of succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase. Characterization using analogs of tetrahydrodipicolinate

J Biol Chem. 1986 May 15;261(14):6160-7.

Abstract

Cyclic and acyclic analogs of tetrahydrodipicolinate (THDPA) are evaluated in a study of the active site of succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase. In addition to the natural substrate, THDPA, one cyclic and several acyclic compounds are also succinylated. 2-Hydroxytetrahydropyran-2,6-dicarboxylic acid is a potent competitive inhibitor having a Kis of 58 nM. Based on the results of this study, a stereochemical model for the succinylation of THDPA is proposed. The major features of this model are as follows. 1) The succinylase binds THDPA (L-configuration). 2) Hydration of the imine group follows to give 2-hydroxypiperidine-2,6-dicarboxylic acid in which the two carboxyl groups are trans. 3) Succinylation then occurs and the ring opens to give the acyclic product. It is suggested that 2-hydroxytetrahydropyran-2,6-dicarboxylic acid is a transition state analog by virtue of the fact that it structurally resembles the hydrated intermediate.

MeSH terms

  • Acyl Coenzyme A / metabolism
  • Acyltransferases / metabolism*
  • Binding Sites
  • Chemical Phenomena
  • Chemistry, Physical
  • Kinetics
  • Mathematics
  • Pimelic Acids / pharmacology
  • Protein Conformation
  • Pyridines / pharmacology*
  • Structure-Activity Relationship
  • Thiazines / pharmacology

Substances

  • Acyl Coenzyme A
  • Pimelic Acids
  • Pyridines
  • Thiazines
  • 2,3,4,5-tetrahydro-2,6-pyridinedicarboxylic acid
  • alpha-aminopimelic acid
  • 3,4-dihydro-2H-1,4-thiazine-3,5-dicarboxylic acid
  • succinyl-coenzyme A
  • Acyltransferases
  • succinyl-CoA-tetrahydrodipicolinate N-succinyltransferase