Genomic and transcriptomic insights into the precision treatment of pulmonary enteric adenocarcinoma

Lung Cancer. 2023 May:179:107169. doi: 10.1016/j.lungcan.2023.03.005. Epub 2023 Mar 11.

Abstract

Background: Pulmonary enteric adenocarcinoma (PEAC) is a rare subtype of lung adenocarcinoma. More investigations about precision therapy in PEAC were required to improve the prognosis.

Methods: Twenty-four patients with PEAC were enrolled in this study. Tumor tissue samples were available from 17 patients for both DNA and RNA based next-generation sequencing, PD-L1 IHC staining and PCR-based microsatellite instability (MSI) analysis.

Results: TP53 (70.6%) and KRAS (47.1%) were the most frequently mutated genes in PEAC. For KRAS mutations, the prevalence of G12D (37.5%) and G12V (37.5%) was higher than G12A (12.5%) and G12C (12.5%). Actionable mutations in receptor tyrosine kinase (including one EGFR and two ALK mutations), PI3K/mTOR, RAS/RAF/MEK, homologous recombination repair (HRR) and cell cycle signaling pathways were identified in 94.1% of patients with PEAC. While PD-L1 expression was observed in 17.6% (3/17) patients, no MSI-H patients were identified. Transcriptomic data showed that two patients with positive PD-L1 expression had relatively high immune infiltration. In addition, prolonged survival was obtained with the treatment of osimertinib, ensartinib, and immunotherapy combined with chemotherapy in two EGFR-mutated, one ALK-rearranged, and one PD-L1 expressed patients, respectively.

Conclusion: PEAC is a disease of genetic heterogeneity. The administration of EGFR and ALK inhibitors was effective in patients with PEAC. PD-L1 expression and KRAS mutation type may be used as predictive biomarkers for immunotherapy in PEAC. This study provided both theoretical basis and clinical evidence for PEAC.

Keywords: Immunotherapy; Next-generation sequencing; Predictive biomarker; Pulmonary enteric adenocarcinoma; Targeted therapy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma of Lung* / pathology
  • B7-H1 Antigen / metabolism
  • Biomarkers, Tumor / genetics
  • ErbB Receptors / genetics
  • Genomics
  • Humans
  • Lung Neoplasms* / pathology
  • Mutation
  • Proto-Oncogene Proteins p21(ras) / genetics
  • Receptor Protein-Tyrosine Kinases / genetics
  • Transcriptome

Substances

  • B7-H1 Antigen
  • Proto-Oncogene Proteins p21(ras)
  • ErbB Receptors
  • Receptor Protein-Tyrosine Kinases
  • Biomarkers, Tumor