An ultra-high-throughput screen for the evaluation of peptide HLA-Binder interactions

Sci Rep. 2023 Mar 31;13(1):5290. doi: 10.1038/s41598-023-32384-z.

Abstract

Peptide human leukocyte antigen (pHLA) targeting therapeutics like T-cell receptor based adoptive cell therapy or bispecific T cell engaging receptor molecules hold great promise for the treatment of cancer. Comprehensive pre-clinical screening of therapeutic candidates is important to ensure patient safety but is challenging because of the size of the potential off-target space. By combining stabilized peptide-receptive HLA molecules with microarray printing and screening, we have developed an ultra-high-throughput screening platform named ValidaTe that enables large scale evaluation of pHLA-binder interactions. We demonstrate its potential by measuring and analyzing over 30.000 binding curves for a high-affinity T cell Engaging Receptor towards a large pHLA library. Compared to a dataset obtained by conventional bio-layer interferometry measurements, we illustrate that a massively increased throughput (over 650 fold) is obtained by our microarray screening, paving the way for use in pre-clinical safety screening of pHLA-targeting drugs.

MeSH terms

  • Humans
  • Neoplasms*
  • Peptide Library
  • Peptides* / chemistry
  • Receptors, Antigen, T-Cell

Substances

  • Peptides
  • Receptors, Antigen, T-Cell
  • Peptide Library