CIRO: COVID-19 infection risk ontology

PLoS One. 2023 Mar 30;18(3):e0282291. doi: 10.1371/journal.pone.0282291. eCollection 2023.

Abstract

Public health authorities perform contact tracing for highly contagious agents to identify close contacts with the infected cases. However, during the pandemic caused by coronavirus disease 2019 (COVID-19), this operation was not employed in countries with high patient volumes. Meanwhile, the Japanese government conducted this operation, thereby contributing to the control of infections, at the cost of arduous manual labor by public health officials. To ease the burden of the officials, this study attempted to automate the assessment of each person's infection risk through an ontology, called COVID-19 Infection Risk Ontology (CIRO). This ontology expresses infection risks of COVID-19 formulated by the Japanese government, toward automated assessment of infection risks of individuals, using Resource Description Framework (RDF) and SPARQL (SPARQL Protocol and RDF Query Language) queries. For evaluation, we demonstrated that the knowledge graph built could infer the risks, formulated by the government. Moreover, we conducted reasoning experiments to analyze the computational efficiency. The experiments demonstrated usefulness of the knowledge processing, and identified issues left for deployment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19* / epidemiology
  • Humans
  • Risk Assessment* / methods

Grants and funding

This work was supported in part by the Japan Agency for Medical Research and Development (AMED) under Grant JP20he0622042, and by Ministry of Health, Labour and Wel- fare (MHLW) under Program Grant Number 21HA2015. There was no additional external funding received for this study.