Rational Design of Phosphorylation-Responsive Coiled Coil-Peptide Assemblies

ACS Synth Biol. 2023 Apr 21;12(4):1308-1319. doi: 10.1021/acssynbio.3c00064. Epub 2023 Mar 29.

Abstract

De novo peptides and proteins that switch state in response to chemical and physical cues would advance protein design and synthetic biology. Here we report two designed systems that disassemble and reassemble upon site-specific phosphorylation and dephosphorylation, respectively. As starting points, we use hyperthermostable de novo antiparallel and parallel coiled-coil heterotetramers, i.e., A2B2 systems, to afford control in downstream applications. The switches are incorporated by adding protein kinase A phosphorylation sites, R-R-X-S, with the phosphoacceptor serine residues placed to maximize disruption of the coiled-coil interfaces. The unphosphorylated peptides assemble as designed and unfold reversibly when heated. Addition of kinase to the assembled states unfolds them with half-lives of ≤5 min. Phosphorylation is reversed by Lambda Protein Phosphatase resulting in tetramer reassembly. We envisage that the new de novo designed coiled-coil components, the switches, and a mechanistic model for them will be useful in synthetic biology, biomaterials, and biotechnology applications.

Keywords: coiled coil; inducible conformational switch; phosphorylation; protein design; rational peptide design; synthetic biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Peptides* / metabolism
  • Phosphorylation
  • Protein Domains
  • Protein Structure, Secondary
  • Proteins* / metabolism

Substances

  • Peptides
  • Proteins