Composition of Particulate Matter and Bacterial Community in Gut Contents and Surrounding Sediments of Three Sipunculan Species (Siphonosoma australe, Phascolosoma arcuatum, and Sipunculus nudus)

Int J Mol Sci. 2023 Mar 22;24(6):6001. doi: 10.3390/ijms24066001.

Abstract

Siphonosoma australe, Phascolosoma arcuatum, and Sipunculus nudus are three important sipunculan species in tropical intertidal zones. In this study, the particle size, organic matter content, and bacterial community composition in the gut contents of three different sipunculans and their surrounding sediments were analyzed. The grain size fractions of sipunculans' guts were significantly different from those of their surrounding sediments; particle size fractions < 500 μm were favored by the sipunculans. As for the total organic matter (TOM), higher contents of organic matter were observed in the guts than in the surrounding sediments in all three sipunculan species. The bacterial community composition of all the samples was investigated by 16S rRNA gene sequencing, in which a total of 8974 OTUs were obtained from 24 samples based on a 97% threshold. The predominant phylum identified from the gut contents of three sipunculans was Planctomycetota, while the predominant phylum in their surrounding sediments was Proteobacteria. At the genus level, the most abundant genus was Sulfurovum (average 4.36%) in the surrounding sediments, while the most abundant genus was Gplla (average 12.76%) in the gut contents. The UPGMA tree showed that the samples from the guts of three different sipunculans and their surrounding sediments were clustered separately into two groups, which showed that these three sipunculans had a different bacterial community composition with their surrounding sediments. The grain size and total organic matter (TOM) had the greatest impacts on the bacterial community composition at both the phylum and genus levels. In conclusion, the differences in particle size fractions, organic matter content, and bacterial community composition between the gut contents and surrounding sediments in these three sipunculan species might be caused by their selective ingestion.

Keywords: 16S ribosomal RNA; bacterial community composition; grain size; sipunculan worms; total organic matter.

MeSH terms

  • Animals
  • Bacteria / genetics
  • Geologic Sediments
  • Nematoda* / genetics
  • Particulate Matter*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics

Substances

  • Particulate Matter
  • RNA, Ribosomal, 16S

Grants and funding

This research was funded by the National Key Research and Development Program of China (2022YFD2401305), the Key Research and Development Project of Hainan Province (ZDYF2022XDNY246), and the Startup Foundation of Hainan University (KYQD(ZR)20059).