Nanobodies Selectively Binding to the Idiotype of a Dengue Virus Neutralizing Antibody Do Not Necessarily Mimic the Viral Epitope

Biomolecules. 2023 Mar 17;13(3):551. doi: 10.3390/biom13030551.

Abstract

Vaccination against dengue virus is challenged by the fact that a generic immune response can induce antibody-dependent-enhancement (ADE) in secondary infections. Only some antibodies targeting a quaternary epitope formed by the dimerization of the virus protein E possess sufficient neutralizing capacity. Therefore, the immunization with anti-idiotypic antibodies of neutralizing antibodies might represent a safe vaccination strategy. Starting from a large pre-immune library, we succeeded in isolating a wide set of anti-idiotypic nanobodies characterized by selective and strong binding to the paratope of the neutralizing antibody 1C10. However, the mice immunized with such constructs did not produce effective antibodies, despite at least some of them eliciting an immune response selective for the nanobody variable regions. The results suggest that complex conformational epitopes might be difficult to be recreated by anti-idiotypic structures. The selection process of the anti-idiotypic candidates might be optimized by applying epitope mapping and modeling approaches aimed at identifying the key residues that is necessary to bind to trigger selective immune response.

Keywords: anti-idiotypic antibodies; dengue; immune response; nanobodies; panning; paratope structure; vaccination.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antibodies, Neutralizing
  • Antibodies, Viral
  • Dengue Virus*
  • Dengue*
  • Epitopes / chemistry
  • Mice
  • Single-Domain Antibodies*

Substances

  • Epitopes
  • Single-Domain Antibodies
  • Antibodies, Viral
  • Antibodies, Neutralizing

Grants and funding

This research was funded by Javna agencija za raziskovalno dejavnost Republike Slovenije, grant number ARRS/P3-0428.