Ultrafast structural changes direct the first molecular events of vision

Nature. 2023 Mar;615(7954):939-944. doi: 10.1038/s41586-023-05863-6. Epub 2023 Mar 22.

Abstract

Vision is initiated by the rhodopsin family of light-sensitive G protein-coupled receptors (GPCRs)1. A photon is absorbed by the 11-cis retinal chromophore of rhodopsin, which isomerizes within 200 femtoseconds to the all-trans conformation2, thereby initiating the cellular signal transduction processes that ultimately lead to vision. However, the intramolecular mechanism by which the photoactivated retinal induces the activation events inside rhodopsin remains experimentally unclear. Here we use ultrafast time-resolved crystallography at room temperature3 to determine how an isomerized twisted all-trans retinal stores the photon energy that is required to initiate the protein conformational changes associated with the formation of the G protein-binding signalling state. The distorted retinal at a 1-ps time delay after photoactivation has pulled away from half of its numerous interactions with its binding pocket, and the excess of the photon energy is released through an anisotropic protein breathing motion in the direction of the extracellular space. Notably, the very early structural motions in the protein side chains of rhodopsin appear in regions that are involved in later stages of the conserved class A GPCR activation mechanism. Our study sheds light on the earliest stages of vision in vertebrates and points to fundamental aspects of the molecular mechanisms of agonist-mediated GPCR activation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Binding Sites / radiation effects
  • Crystallography
  • Heterotrimeric GTP-Binding Proteins / chemistry
  • Heterotrimeric GTP-Binding Proteins / metabolism
  • Isomerism
  • Photons
  • Protein Binding / radiation effects
  • Protein Conformation / radiation effects
  • Retinaldehyde / chemistry
  • Retinaldehyde / metabolism
  • Retinaldehyde / radiation effects
  • Rhodopsin* / chemistry
  • Rhodopsin* / metabolism
  • Rhodopsin* / radiation effects
  • Time Factors
  • Vision, Ocular* / physiology
  • Vision, Ocular* / radiation effects

Substances

  • Heterotrimeric GTP-Binding Proteins
  • Retinaldehyde
  • Rhodopsin