EGR1 drives cell proliferation by directly stimulating TFEB transcription in response to starvation

PLoS Biol. 2023 Mar 8;21(3):e3002034. doi: 10.1371/journal.pbio.3002034. eCollection 2023 Mar.

Abstract

The stress-responsive transcription factor EB (TFEB) is a master controller of lysosomal biogenesis and autophagy and plays a major role in several cancer-associated diseases. TFEB is regulated at the posttranslational level by the nutrient-sensitive kinase complex mTORC1. However, little is known about the regulation of TFEB transcription. Here, through integrative genomic approaches, we identify the immediate-early gene EGR1 as a positive transcriptional regulator of TFEB expression in human cells and demonstrate that, in the absence of EGR1, TFEB-mediated transcriptional response to starvation is impaired. Remarkably, both genetic and pharmacological inhibition of EGR1, using the MEK1/2 inhibitor Trametinib, significantly reduced the proliferation of 2D and 3D cultures of cells displaying constitutive activation of TFEB, including those from a patient with Birt-Hogg-Dubé (BHD) syndrome, a TFEB-driven inherited cancer condition. Overall, we uncover an additional layer of TFEB regulation consisting in modulating its transcription via EGR1 and propose that interfering with the EGR1-TFEB axis may represent a therapeutic strategy to counteract constitutive TFEB activation in cancer-associated conditions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Autophagy* / genetics
  • Basic Helix-Loop-Helix Leucine Zipper Transcription Factors / genetics
  • Basic Helix-Loop-Helix Leucine Zipper Transcription Factors / metabolism
  • Cell Proliferation / genetics
  • Early Growth Response Protein 1 / genetics
  • Early Growth Response Protein 1 / metabolism
  • Humans
  • Lysosomes* / metabolism
  • Mechanistic Target of Rapamycin Complex 1 / genetics
  • Mechanistic Target of Rapamycin Complex 1 / metabolism

Substances

  • Mechanistic Target of Rapamycin Complex 1
  • EGR1 protein, human
  • Early Growth Response Protein 1
  • TFEB protein, human
  • Basic Helix-Loop-Helix Leucine Zipper Transcription Factors

Grants and funding

We acknowledge the support of the following funding agencies: the Italian Telethon Foundation (to A.B.), the Associazione Italiana per la Ricerca sul Cancro (IG-22103 and 5x1000-21051 to A.B.), the Ministero dell'Università e della Ricerca (PRIN 2017E5L5P3 to A.B.), the European Research Council (H2020 AdG; LYSOSOMICS 694282 to A.B.), the Rita-Levi Montalcini program from MIUR to M.C, the FIRC-AIRC fellowship to S.A. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.