The soil bacterial community regulates germination of Plasmodiophora brassicae resting spores rather than root exudates

PLoS Pathog. 2023 Mar 2;19(3):e1011175. doi: 10.1371/journal.ppat.1011175. eCollection 2023 Mar.

Abstract

Clubroot, caused by Plasmodiophora brassicae, is a severe soil-borne disease that restricts the production of cruciferous crops worldwide. A better understanding of biotic and abiotic factors regulating germination of P. brassicae resting spores in the soil is significant for developing novel control methods. Previous studies reported that root exudates can trigger P. brassicae resting spore germination, thus enabling a targeted attack of P. brassicae on host plant roots. However, we found that native root exudates collected under sterile conditions from host or non-host plants cannot stimulate the germination of sterile spores, indicating that root exudates may not be direct stimulation factors. Instead, our studies demonstrate that soil bacteria are essential for triggering germination. Through 16s rRNA amplicon sequencing analysis, we found that certain carbon sources and nitrate can reshape the initial microbial community to an inducing community leading to the germination of P. brassicae resting spores. The stimulating communities significantly differed in composition and abundance of bacterial taxa compared to the non-stimulating ones. Several enriched bacterial taxa in stimulating community were significantly correlated with spore germination rates and may be involved as stimulation factors. Based on our findings, a multi-factorial 'pathobiome' model comprising abiotic and biotic factors is proposed to represent the putative plant-microbiome-pathogen interactions associated with breaking spore dormancy of P. brassicae in soil. This study presents novel views on P. brassicae pathogenicity and lays the foundation for novel sustainable control strategies of clubroot.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Exudates and Transudates
  • Germination*
  • Plasmodiophorida*
  • RNA, Ribosomal, 16S / genetics
  • Soil
  • Spores, Protozoan

Substances

  • RNA, Ribosomal, 16S
  • Soil

Grants and funding

YW was sponsored by China Scholarship Council (CSC) and this work was supported by Division of Plant Pathology and Plant Protection, Georg-August-University Göttingen. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.