An Update on Eukaryotic Viruses Revived from Ancient Permafrost

Viruses. 2023 Feb 18;15(2):564. doi: 10.3390/v15020564.

Abstract

One quarter of the Northern hemisphere is underlain by permanently frozen ground, referred to as permafrost. Due to climate warming, irreversibly thawing permafrost is releasing organic matter frozen for up to a million years, most of which decomposes into carbon dioxide and methane, further enhancing the greenhouse effect. Part of this organic matter also consists of revived cellular microbes (prokaryotes, unicellular eukaryotes) as well as viruses that have remained dormant since prehistorical times. While the literature abounds on descriptions of the rich and diverse prokaryotic microbiomes found in permafrost, no additional report about "live" viruses have been published since the two original studies describing pithovirus (in 2014) and mollivirus (in 2015). This wrongly suggests that such occurrences are rare and that "zombie viruses" are not a public health threat. To restore an appreciation closer to reality, we report the preliminary characterizations of 13 new viruses isolated from seven different ancient Siberian permafrost samples, one from the Lena river and one from Kamchatka cryosol. As expected from the host specificity imposed by our protocol, these viruses belong to five different clades infecting Acanthamoeba spp. but not previously revived from permafrost: Pandoravirus, Cedratvirus, Megavirus, and Pacmanvirus, in addition to a new Pithovirus strain.

Keywords: Acanthamoeba; Kamchatka; Pleistocene; Siberia; giant virus; permafrost.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acanthamoeba*
  • Carbon Dioxide
  • Eukaryota
  • Eukaryotic Cells
  • Permafrost*

Substances

  • Carbon Dioxide

Grants and funding

This work was supported by the Agence Nationale de la Recherche grant (ANR-10-INBS-09-08) to J-MC, the CNRS Projet de Recherche Conjoint (PRC) grant (PRC1484-2018) to CA, the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No 832601) to C.A., and the recurrent CNRS funding to the IGS laboratory. GG and JS were funded by a European Research Council starting grant (PETA-CARB, #338335) and the Helmholtz Association of German Research Centres (HGF) Impulse and Networking Fund (ERC-0013).