Rescue of Rare CFTR Trafficking Mutants Highlights a Structural Location-Dependent Pattern for Correction

Int J Mol Sci. 2023 Feb 6;24(4):3211. doi: 10.3390/ijms24043211.

Abstract

Cystic Fibrosis (CF) is a genetic disease caused by mutations in the gene encoding the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) channel. Currently, more than 2100 variants have been identified in the gene, with a large number being very rare. The approval of modulators that act on mutant CFTR protein, correcting its molecular defect and thus alleviating the burden of the disease, revolutionized the field of CF. However, these drugs do not apply to all patients with CF, especially those with rare mutations-for which there is a lack of knowledge on the molecular mechanisms of the disease and the response to modulators. In this work, we evaluated the impact of several rare putative class II mutations on the expression, processing, and response of CFTR to modulators. Novel cell models consisting of bronchial epithelial cell lines expressing CFTR with 14 rare variants were created. The variants studied are localized at Transmembrane Domain 1 (TMD1) or very close to the signature motif of Nucleotide Binding Domain 1 (NBD1). Our data show that all mutations analyzed significantly decrease CFTR processing and while TMD1 mutations respond to modulators, those localized in NBD1 do not. Molecular modeling calculations confirm that the mutations in NBD1 induce greater destabilization of CFTR structure than those in TMD1. Furthermore, the structural proximity of TMD1 mutants to the reported binding site of CFTR modulators such as VX-809 and VX-661, make them more efficient in stabilizing the CFTR mutants analyzed. Overall, our data suggest a pattern for mutation location and impact in response to modulators that correlates with the global effect of the mutations on CFTR structure.

Keywords: CFTR; Cystic Fibrosis; correctors; protein stability; protein trafficking.

MeSH terms

  • Benzodioxoles / pharmacology
  • Binding Sites
  • Cystic Fibrosis Transmembrane Conductance Regulator* / genetics
  • Cystic Fibrosis* / genetics
  • Humans
  • Models, Molecular
  • Mutation

Substances

  • Cystic Fibrosis Transmembrane Conductance Regulator
  • Benzodioxoles
  • CFTR protein, human

Grants and funding

Work supported by UIDB/04046/2020 and UIDP/04046/2020 centre grants (to BioISI), from FCT/MCTES Portugal, and research grant FARINH19I0 from Cystic Fibrosis Foundation (to C.M.F.). SSR was a recipient of PhD fellowships SFRH/BD/142857/2018 from BioSys PhD programme PD/00065/2012 from FCT (Portugal).