Genome Survey Sequencing of the Mole Cricket Gryllotalpa orientalis

Genes (Basel). 2023 Jan 18;14(2):255. doi: 10.3390/genes14020255.

Abstract

The mole cricket Gryllotalpa orientalis is an evolutionarily, medicinal, and agriculturally significant insect that inhabits underground environments and is distributed globally. This study measured genome size by flow cytometry and k-mer based on low-coverage sequencing, and nuclear repetitive elements were also identified. The haploid genome size estimate is 3.14 Gb by flow cytometry, 3.17 Gb, and 3.77 Gb-based two k-mer methods, respectively, which is well within the range previously reported for other species of the suborder Ensifera. 56% of repetitive elements were found in G. orientalis, similar to 56.83% in Locusta migratoria. However, the great size of repetitive sequences could not be annotated to specific repeat element families. For the repetitive elements that were annotated, Class I-LINE retrotransposon elements were the most common families and more abundant than satellite and Class I-LTR. These results based on the newly developed genome survey could be used in the taxonomic study and whole genome sequencing to improve the understanding of the biology of G. orientalis.

Keywords: flow cytometry; genome size; genome survey; k-mer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chromosome Mapping
  • Genome Size
  • Gryllidae* / genetics
  • Repetitive Sequences, Nucleic Acid

Grants and funding

National Natural Science Foundation of China, grant number: 31872273, 32270493; Fundamental Research Funds for the Central Universities, grant number: GK201903063, GK202105003.