Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum

Cell Rep. 2023 Mar 28;42(3):112158. doi: 10.1016/j.celrep.2023.112158. Epub 2023 Feb 22.

Abstract

The biology of Korarchaeia remains elusive due to the lack of genome representatives. Here, we reconstruct 10 closely related metagenome-assembled genomes from hot spring habitats and place them into a single species, proposed herein as Panguiarchaeum symbiosum. Functional investigation suggests that Panguiarchaeum symbiosum is strictly anaerobic and grows exclusively in thermal habitats by fermenting peptides coupled with sulfide and hydrogen production to dispose of electrons. Due to its inability to biosynthesize archaeal membranes, amino acids, and purines, this species likely exists in a symbiotic lifestyle similar to DPANN archaea. Population metagenomics and metatranscriptomic analyses demonstrated that genes associated with amino acid/peptide uptake and cell attachment exhibited positive selection and were highly expressed, supporting the proposed proteolytic catabolism and symbiotic lifestyle. Our study sheds light on the metabolism, evolution, and potential symbiotic lifestyle of Panguiarchaeum symbiosum, which may be a unique host-dependent archaeon within the TACK superphylum.

Keywords: CP: Microbiology; Panguiarchaeum symbiosum; cell-cell interaction; metagenomics; mutualistic symbiosis; population metagenomics; positive selection.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / metabolism
  • Anaerobiosis
  • Archaea* / classification
  • Archaea* / cytology
  • Archaea* / genetics
  • Cell Adhesion / genetics
  • Coenzymes / metabolism
  • Fermentation
  • Gene Expression Regulation, Archaeal
  • Genes, Archaeal
  • Genome, Archaeal
  • Hot Springs* / microbiology
  • Metagenome
  • Metagenomics
  • Peptides / metabolism
  • Phylogeography
  • Polymorphism, Single Nucleotide / genetics
  • Proteolysis
  • Sulfur / metabolism
  • Symbiosis* / genetics

Substances

  • Amino Acids
  • Coenzymes
  • Sulfur
  • Peptides

Associated data

  • figshare/10.6084/m9.figshare.21782240