Halocatena salina sp. nov., a filamentous halophilic archaeon isolated from Aiding Salt Lake

Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005637.

Abstract

A filamentous cell-shaped halophilic archaeon (strain AD-1T) was isolated from Aiding Salt Lake, PR China. Its colonies on HCM7 agar plates were pinkish white, 1-4 mm (diameter), elevated and round. The optimum conditions for growth were observed at 42 °C, 4.3 M NaCl, 0.01 M MgCl2 and pH 7. Strain AD-1T could hydrolyse Tween 60, Tween 80, starch and gelatin. Phylogenetic analysis based on 16S rRNA gene, rpoB' and the concatenated 484 single-copy orthologous proteins revealed that strain AD-1T formed a clade with Halocatena pleomorpha SPP-AMP-1T. The average nucleotide identity and in silico DNA-DNA hybridization values between strain AD-1T and Halocatena pleomorpha SPP-AMP-1T were both below the species delineation thresholds (95~96 and 70 %, respectively). The major phospholipids of strain AD-1T were phosphatidic acid, phosphatidylglycerol and phosphatidylglycerol phosphate methyl ester, while the major glycolipids were sulphated galactosyl mannosyl glucosyl diether, galactosyl mannosyl glucosyl diether and glucosyl mannosyl glucosyl diether. The phenotypic, phylogenetic and genome-based analyses suggested that strain AD-1T (=CGMCC 1.13724T=JCM 32960T) represents a novel species, for which the name Halocatena salina sp. nov. is proposed.

Keywords: Halocatena salina sp. nov.; aiding salt lake; filamentous halophilic archaeon; novel species.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Archaeal / genetics
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Glycolipids / analysis
  • Halobacteriaceae*
  • Halobacteriales*
  • Lakes
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • RNA, Ribosomal, 16S
  • DNA, Archaeal
  • DNA, Bacterial
  • Fatty Acids
  • Glycolipids