The APOBEC3B cytidine deaminase is an adenovirus restriction factor

PLoS Pathog. 2023 Feb 6;19(2):e1011156. doi: 10.1371/journal.ppat.1011156. eCollection 2023 Feb.

Abstract

Human adenoviruses (HAdVs) are a large family of DNA viruses counting more than a hundred strains divided into seven species (A to G). HAdVs induce respiratory tract infections, gastroenteritis and conjunctivitis. APOBEC3B is a cytidine deaminase that restricts several DNA viruses. APOBEC3B is also implicated in numerous cancers where it is responsible for the introduction of clustered mutations into the cellular genome. In this study, we demonstrate that APOBEC3B is an adenovirus restriction factor acting through a deaminase-dependent mechanism. APOBEC3B introduces C-to-T clustered mutations into the adenovirus genome. APOBEC3B reduces the propagation of adenoviruses by limiting viral genome replication, progression to late phase, and production of infectious virions. APOBEC3B restriction efficiency varies between adenoviral strains, the A12 strain being more sensitive to APOBEC3B than the B3 or C2 strains. In A12-infected cells, APOBEC3B clusters in the viral replication centers. Importantly, we show that adenovirus infection leads to a reduction of the quantity and/or enzymatic activity of the APOBEC3B protein depending on the strains. The A12 strain seems less able to resist APOBEC3B than the B3 or C2 strains, a characteristic which could explain the strong depletion of the APOBEC3-targeted motifs in the A12 genome. These findings suggest that adenoviruses evolved different mechanisms to antagonize APOBEC3B. Elucidating these mechanisms could benefit the design of cancer treatments. This study also identifies adenoviruses as triggers of the APOBEC3B-mediated innate response. The involvement of certain adenoviral strains in the genesis of the APOBEC3 mutational signature observed in tumors deserves further study.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenoviridae / genetics
  • Adenoviridae / metabolism
  • Adenoviridae Infections*
  • Cytidine Deaminase / genetics
  • Cytidine Deaminase / metabolism
  • Humans
  • Minor Histocompatibility Antigens / genetics
  • Neoplasms* / pathology
  • Proteins / metabolism

Substances

  • Cytidine Deaminase
  • Proteins
  • Minor Histocompatibility Antigens
  • APOBEC3B protein, human

Grants and funding

This study was supported by FRS-FNRS grant CDR n°31270116 and n°40007814 and by the University of Namur. NL is a PhD fellow supported by FRIA grant n°31454280. SM is a PhD fellow supported by FRIA grant n°40008651. FP is a PhD fellow supported by Télévie grant PDR-TLV n°34972507. AD is a PhD fellow supported by an FSR grant co-founded between University of Namur (Belgium) and University of Mons (Belgium). KAR is supported by the Allocation de Recherche du Ministère français de la Recherche. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.