Research on bacterial community characteristics of traditional fermented yak milk in the Tibetan Plateau based on high-throughput sequencing

PeerJ. 2023 Jan 25:11:e14733. doi: 10.7717/peerj.14733. eCollection 2023.

Abstract

Background: The Tibetan Plateau has an abundance of yak milk resources. The complex microbiota found in traditional fermented yak milk produced and sold by local Tibetans endows the yak milk with unique quality characteristics such as tissue morphology, flavor, and function. However, the diversity of bacterial flora in traditional fermented yak milk have not been elucidated.

Methods: In this study, 15 samples of fermented yak milk were collected for 16S rRNA high-throughput sequencing to analyze the bacterial community composition and function.

Results: After filtering for quality, 792,642 high-quality sequences were obtained, and 13 kinds of different phyla and 82 kinds of different genera were identified, of which the phylum Firmicutes (98.94%) was the dominant phylum, Lactobacillus (64.73%) and Streptococcus (28.48%) were identified as the dominant genus, in addition, the bacterial community richness and diversity were higher in Manang Village, followed by Bola Village. Bacterial community richness and diversity in Huage Village were relatively low. Based on the Kyoto Encyclopedia of Genes and Genomes (KEGG) functional classification, the microorganisms in traditional fermented yak milk have rich metabolic functions (77.60%). These findings suggest that a large number of bacteria in traditional fermented yak milk contain abundant metabolic genes and can carry out a variety of growth and metabolic activities. This study established a theoretical foundation for further exploring the microbial flora of traditional fermented yak milk in Gannan.

Keywords: Bacterial diversity; High-throughput sequencing; Plateau Tibetan area; Traditional fermented yak milk.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bacteria* / genetics
  • Cattle
  • High-Throughput Nucleotide Sequencing
  • Milk* / microbiology
  • RNA, Ribosomal, 16S / genetics
  • Tibet

Substances

  • RNA, Ribosomal, 16S

Grants and funding

This work was supported by the National Natural Science Foundation of China (No. 32160583,32201951), the Science and Technology Projects for People’s Livelihood of Gansu Province (20CX9NA097), the FUXI Talents Program of Gansu Agricultural University (No. Gaufx-02Y01), and the Natural Science Foundation of Gansu Province (No. 20JR10RA532). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.