Characterization of the complete plastid genome of Korean endemic, Ajuga spectabilis Nakai (Lamiaceae)

Mitochondrial DNA B Resour. 2023 Jan 15;8(1):119-123. doi: 10.1080/23802359.2022.2156258. eCollection 2023.

Abstract

Ajuga spectabilis Nakai is a Korean endemic species in Lamiaceae. In spite of its importance, genomic studies are not performed on this species. Here, we report the complete plastid genome sequences of A. spectabilis, which will provide valuable information for its natural conservation and future studies for the plastid genome evolution. The plastid genome is 150,417 bp in length, containing a large single-copy region (LSC) of 82,140 bp and a small single-copy (SSC) region of 17,165 bp which are separated by a pair of inverted repeats (IR) of 25,556 bp. It encodes 113 genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The overall GC content is 38.3%, and those in the LSC, SSC, and IR regions are 36.4%, 32.2%, and 43.3%, respectively, which is consistent with other Ajuga species. Our phylogenetic analysis revealed that A. spectabilis formed a close relationship with A. ciliata and A. decumbens.

Keywords: Ajuga spectabilis; Korean endemic; Lamiaceae; Plastid genome; phylogenetic analyses.

Grants and funding

This work was supported by grants [KNA1-1-13, 14-1] received from the Scientific research of Korea National Arboretum and the Gachon University research fund of 2019 (GCU-2019-0821).