Polymorphisms in ACE1, TMPRSS2, IFIH1, IFNAR2, and TYK2 Genes Are Associated with Worse Clinical Outcomes in COVID-19

Genes (Basel). 2022 Dec 22;14(1):29. doi: 10.3390/genes14010029.

Abstract

Although advanced age, male sex, and some comorbidities impact the clinical course of COVID-19, these factors only partially explain the inter-individual variability in disease severity. Some studies have shown that genetic polymorphisms contribute to COVID-19 severity; however, the results are inconclusive. Thus, we investigated the association between polymorphisms in ACE1, ACE2, DPP9, IFIH1, IFNAR2, IFNL4, TLR3, TMPRSS2, and TYK2 and the clinical course of COVID-19. A total of 694 patients with COVID-19 were categorized as: (1) ward inpatients (moderate symptoms) or patients admitted at the intensive care unit (ICU; severe symptoms); and (2) survivors or non-survivors. In females, the rs1990760/IFIH1 T/T genotype was associated with risk of ICU admission and death. Moreover, the rs1799752/ACE1 Ins and rs12329760/TMPRSS2 T alleles were associated with risk of ICU admission. In non-white patients, the rs2236757/IFNAR2 A/A genotype was associated with risk of ICU admission, while the rs1799752/ACE1 Ins/Ins genotype, rs2236757/IFNAR2 A/A genotype, and rs12329760/TMPRSS2 T allele were associated with risk of death. Moreover, some of the analyzed polymorphisms interact in the risk of worse COVID-19 outcomes. In conclusion, this study shows an association of rs1799752/ACE1, rs1990760/IFIH1, rs2236757/IFNAR2, rs12329760/TMPRSS2, and rs2304256/TYK2 polymorphisms with worse COVID-19 outcomes, especially among female and non-white patients.

Keywords: ACE1; COVID-19; IFIH1; IFNAR2; SARS-CoV-2; TMPRSS2; TYK2; polymorphisms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • COVID-19* / genetics
  • Disease Progression
  • Female
  • Genotype
  • Humans
  • Interferon-Induced Helicase, IFIH1 / genetics
  • Interleukins / genetics
  • Male
  • Polymorphism, Genetic
  • Receptor, Interferon alpha-beta / genetics
  • Serine Endopeptidases / genetics
  • TYK2 Kinase / genetics

Substances

  • Interferon-Induced Helicase, IFIH1
  • IFIH1 protein, human
  • TYK2 protein, human
  • TYK2 Kinase
  • IFNAR2 protein, human
  • Receptor, Interferon alpha-beta
  • TMPRSS2 protein, human
  • Serine Endopeptidases
  • IFNL4 protein, human
  • Interleukins

Grants and funding

This study was funded by the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, grant number 401610/2020-9), Fundo de Incentivo à Pesquisa e Eventos at Hospital de Clínicas de Porto Alegre (FIPE, grant number: 2020-0218), and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES). D.C., C.B.L., L.H.C., M.R.A., and M.S.d.O. are recipients of scholarships from CNPq, while C.D., and F.M.P. are recipients of CAPES scholarships. N.E.L. is a recipient of FAPESP scholarship. A.F.S. and E.G. are recipients of FAPERGS scholarships.